The ends of a large RNA molecule are necessarily close
|Title||The ends of a large RNA molecule are necessarily close|
|Publication Type||Journal Article|
|Year of Publication||2010|
|Authors||Yoffe, AM, Prinsen, P, Gelbart, WM, Ben-Shaul, A|
|Journal||Nucleic acids research|
We show on general theoretical grounds that the two ends of single-stranded (ss) RNA molecules (consisting of roughly equal proportions of A, C, G and U) are necessarily close together, largely independent of their length and sequence. This is demonstrated to be a direct consequence of two generic properties of the equilibrium secondary structures, namely that the average proportion of bases in pairs is∼ 60% and that the average duplex length is∼ 4. Based on mfold and Vienna computations on large numbers of ssRNAs of ...