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Journal Article
Garmann, R. F., Comas-Garcia, M., Gopal, A., Knobler, C. M. & Gelbart, W. M. The Assembly Pathway of an Icosahedral Single-Stranded Virus Depends on the Strength of Inter-Subunit Attractions. Journal of Molecular Biology 426, 1050 - 1060 (2014).
Jin, Y. et al. Bacteriophage P22 ejects all of its internal proteins before its genome. Virology 485, 128–134 (2015).
Comas-Garcia, M. et al. Characterization of Viral Capsid Protein Self-Assembly Around Short Single-Stranded RNA. The Journal of Physical Chemistry B (2014). doi:10.1021/jp503050z
Qiu, X. et al. Charting the Structure and Energetics of Packaged DNA in Bacteriophages. Biophysical Journal 96, 422a (2009).
Jin, Y., Knobler, C. M. & Gelbart, W. M. Controlling the extent of viral genome release by a combination of osmotic stress and polyvalent cations. Physical Review E 92, 022708 (2015).
Prinsen, P., van der Schoot, P., Gelbart, W. M. & Knobler, C. M. Counterion Release Stabilizes Multi-Shell Structures Of Virus Coat Proteins. Biophysical Journal 96, 422a (2009).
Ranson, N. A. et al. Cryo-electron microscopy of viruses. Emerging Topics in Physical Virology 1 (2010).
Gelbart, W. M. Depolarized Light Scattering by Simple Fluids. Advances in Chemical Physics 26, 1–106 (2009).
-Acosta, JR, V., Cadena-Nava, R. D., Gelbart, W. M., Knobler, C. M. & Ruiz-Garcia, J. Electrophoretic mobilities of a viral capsid, its capsid protein, and their relation to viral assembly. The Journal of Physical Chemistry B 118, 1984–1989 (2014).
Yoffe, A. M., Prinsen, P., Gelbart, W. M. & Ben-Shaul, A. The ends of a large RNA molecule are necessarily close. Nucleic acids research gkq642 (2010).
Cadena-Nava, R. D. et al. Exploiting fluorescent polymers to probe the self-assembly of virus-like particles. The Journal of Physical Chemistry B 115, 2386–2391 (2011).
Prinsen, P., Fang, L. Tai, Yoffe, A. M., Knobler, C. M. & Gelbart, W. M. The Force Acting on a Polymer Partially Confined in a Tube†. The Journal of Physical Chemistry B 113, 3873–3879 (2009).
Comas-Garcia, M., Cadena-Nava, R. D., Rao, A. L. N., Knobler, C. K. & Gelbart, W. M. In Vitro Quantification of the Relative Packaging Efficiencies of Single-Stranded RNA Molecules by Viral Capsid Protein. Journal of Virology 86, (2012).
Gelbart, W. M. Invited Speaker RNA and DNA, In and Out of Viral Capsids. Biophysical Journal 100, 189a (2011).
Ben-Shaul, A., Yoffe, A. M., Prinsen, P. & Gelbart, W. M. Modeling the Size and Structure of RNA: Viral vs. Non-viral Sequences. Biophysical Journal 96, 15a (2009).
Prinsen, P., van der Schoot, P., Gelbart, W. M. & Knobler, C. M. Multishell structures of virus coat proteins. The Journal of Physical Chemistry B 114, 5522–5533 (2010).
Ben-Shaul, A. & Gelbart, W. M. New and Notable. Biophysical Journal 108, 14–16 (2015).
Hu, Y., Zandi, R., Anavitarte, A., Knobler, C. M. & Gelbart, W. M. Packaging of a polymer by a viral capsid: the interplay between polymer length and capsid size. Biophysical journal 94, 1428–1436 (2008).
Lavelle, L. et al. Phase Diagram of Self-assembled Viral Capsid Protein Polymorphs†. The Journal of Physical Chemistry B 113, 3813–3819 (2009).
Knobler, C. M. & Gelbart, W. M. Physical chemistry of DNA viruses. Annual review of physical chemistry 60, 367–383 (2009).
Garmann, R. F., Comas-Garcia, M., Knobler, C. M. & Gelbart, W. M. Physical Principles in the Self-Assembly of a Simple Spherical Virus. Accounts of chemical research (2015). doi:10.1021/acs.accounts.5b00350
Yoffe, A. M. et al. Predicting the sizes of large RNA molecules. Proceedings of the National Academy of Sciences 105, 16153–16158 (2008).
Gelbart, W. M. & Knobler, C. M. Pressurized viruses. Science 323, 1682–1683 (2009).
Azizgolshani, O., Garmann, R. F., Cadena-Nava, R., Knobler, C. M. & Gelbart, W. M. Reconstituted plant viral capsids can release genes to mammalian cells. Virology 441, 12–17 (2013).
Snyder, J. E. et al. Rescue of infectious particles from preassembled alphavirus nucleocapsid cores. Journal of virology 85, 5773–5781 (2011).
Garmann, R. F. et al. The Role of Electrostatics in the Assembly Pathway of a Single-Stranded RNA Virus. J Virol (2014). doi:10.1128/JVI.01044-14
Singaram, S. W., Garmann, R. F., Knobler, C. M., Gelbart, W. M. & Ben-Shaul, A. Role of RNA Branchedness in the Competition for Viral Capsid Proteins. The Journal of Physical Chemistry B 119, 13991–14002 (2015).
Qiu, X. et al. Salt-dependent DNA-DNA spacings in intact bacteriophage $łambda$ reflect relative importance of DNA self-repulsion and bending energies. Physical review letters 106, 028102 (2011).
Cadena-Nava, R. D. et al. Self-assembly of viral capsid protein and RNA molecules of different sizes: requirement for a specific high protein/RNA mass ratio. Journal of Virology (2011). doi:10.1128/JVI.06566-11
Fang, L. Tai, Yoffe, A. M., Gelbart, W. M. & Ben-Shaul, A. A sequential folding model predicts length-independent secondary structure properties of long ssRNA. The Journal of Physical Chemistry B 115, 3193–3199 (2011).
Garmann, R. F. et al. A simple RNA-DNA scaffold templates the assembly of monofunctional virus-like particles. Journal of the American Chemical Society (2015). doi:10.1021/jacs.5b03770
Fang, L. Tai, Gelbart, W. M. & Ben-Shaul, A. The size of RNA as an ideal branched polymer. The Journal of Chemical Physics 135, - (2011).
Gopal, A. et al. The Unusual Compactness of Viral RNA. Biophysical Journal 102, 643a (2012).
Gopal, A. et al. Viral RNAs are unusually compact. (2014).
Gopal, A., Z Zhou, H., Knobler, C. M. & Gelbart, W. M. Visualizing large RNA molecules in solution. Rna 18, 284–299 (2012).
Garmann, R. F. et al. Visualizing the global secondary structure of a viral RNA genome with cryo-electron microscopy. rna 21, 877–886 (2015).
Gelbart, W. What determines the size of a virus?. (2012).
Knobler, C. M. & Gelbart, W. M. What Determines the Size of an RNA Virus?. Emerging Topics in Physical Virology 185 (2010).