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What are the Physical Properties - Branching Characteristics and 3D sizes - of viral-length RNA molecules?

The figure to the left is a cryo-electron microscopy image that we obtained [RNA 2012] from a purified solution of the RNA molecules (circled in red) corresponding to one of the genes of CCMV. Each of the molecules in the micrograph is chemically identical to the others – the same 3200 nucleotide (nt)-long sequence of RNA. But they appear different because they have different secondary and tertiary structures and because they have different orientations in the vitreous water in which they are trapped at low temperature; accordingly, they have different 2D projections in the transmission micrograph. Indeed, an RNA molecule this long must be regarded as a “statistical object” that must be represented by an ensemble of configurations, much like a long semi-flexible polymer.

IN VITRO/PHYSICAL CHEMISTRY PROJECTS

 

Virus particles can be as simple as a molecule of RNA or DNA inside a spherical shell – the “capsid” – made up of multiple copies of a single protein. Further, because viruses only “become alive” when they are inside their hosts, it is possible to study them as physical objects, i.e., to do the same controlled experiments (and theory) on them that one routinely does with more familiar polymer and colloidal systems.

The Origin of Icosahedral Symmetry in Viruses

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Certainly one of the most intriguing facts about viruses is that the large majority of them display full icosahedral symmetry, arguably the highest and also the most esthetically-pleasing symmetry shown in Nature. The elements of icosahedral symmetry involve 6 five-fold rotation axes, 10 three-fold, and 15 two-fold. The figure to the right shows a number of examples, including the 60nm-diameter human papilloma virus at one end and 28nm CCMV near the other; similar image reconstructions for still larger viruses, up to the 100nm-diameter herpes simplex virus, are available from cryo-EM and X-ray work (Figure from Review by Baker et al.).
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